Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.2■□□□□ 0.34
CLCN3P51790 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 PDIA3P1-201ENST00000471856 1510 ntBASIC17.2■□□□□ 0.34
CLCN3P51790 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CLCN3P51790 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.19■□□□□ 0.34
CLCN3P51790 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.19■□□□□ 0.34
CLCN3P51790 AC093433.1-201ENST00000458048 571 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.19■□□□□ 0.34
CLCN3P51790 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.19■□□□□ 0.34
CLCN3P51790 AP001063.1-201ENST00000568332 529 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.19■□□□□ 0.34
CLCN3P51790 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 AL022328.1-201ENST00000610050 478 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 AC092127.1-201ENST00000567093 3455 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
CLCN3P51790 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CLCN3P51790 AL391005.1-201ENST00000623953 2435 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLCN3P51790 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.19■□□□□ 0.34
CLCN3P51790 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.19■□□□□ 0.34
CLCN3P51790 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.18■□□□□ 0.34
CLCN3P51790 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.18■□□□□ 0.34
CLCN3P51790 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CLCN3P51790 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CLCN3P51790 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CLCN3P51790 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLCN3P51790 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CLCN3P51790 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.18■□□□□ 0.34
CLCN3P51790 BAATP1-201ENST00000412284 1225 ntBASIC17.18■□□□□ 0.34
CLCN3P51790 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms