Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
MSX2P35548 KRT18P35-201ENST00000510488 1269 ntBASIC15.1■□□□□ 0.01
MSX2P35548 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.1■□□□□ 0.01
MSX2P35548 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.1■□□□□ 0.01
MSX2P35548 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.1■□□□□ 0.01
MSX2P35548 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.1■□□□□ 0.01
MSX2P35548 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 AC073439.1-201ENST00000624121 1774 ntBASIC15.1■□□□□ 0.01
MSX2P35548 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX2P35548 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX2P35548 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 AC097359.2-201ENST00000604992 2389 ntBASIC15.1■□□□□ 0.01
MSX2P35548 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
MSX2P35548 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX2P35548 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 MRPL20P1-201ENST00000400819 433 ntBASIC15.09■□□□□ 0.01
MSX2P35548 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.09■□□□□ 0.01
MSX2P35548 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.09■□□□□ 0.01
MSX2P35548 KRT18P31-201ENST00000506277 1292 ntBASIC15.09■□□□□ 0.01
MSX2P35548 MIR3909-201ENST00000579518 119 ntBASIC15.09■□□□□ 0.01
MSX2P35548 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.09■□□□□ 0.01
MSX2P35548 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
MSX2P35548 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX2P35548 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX2P35548 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
MSX2P35548 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.08■□□□□ 0.01
MSX2P35548 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.08■□□□□ 0.01
MSX2P35548 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
MSX2P35548 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.08■□□□□ 0.01
MSX2P35548 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
MSX2P35548 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
MSX2P35548 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 ZBED1P1-201ENST00000502364 1930 ntBASIC15.08■□□□□ 0
MSX2P35548 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
MSX2P35548 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.08■□□□□ 0
MSX2P35548 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.08■□□□□ 0
MSX2P35548 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.08■□□□□ 0
MSX2P35548 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX2P35548 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms