Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.93■□□□□ 0.46
SMARCA1P28370 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.93■□□□□ 0.46
SMARCA1P28370 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
SMARCA1P28370 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.93■□□□□ 0.46
SMARCA1P28370 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.93■□□□□ 0.46
SMARCA1P28370 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.93■□□□□ 0.46
SMARCA1P28370 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.93■□□□□ 0.46
SMARCA1P28370 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.93■□□□□ 0.46
SMARCA1P28370 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SMARCA1P28370 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.93■□□□□ 0.46
SMARCA1P28370 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SMARCA1P28370 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 AL138799.1-201ENST00000448213 1675 ntBASIC17.93■□□□□ 0.46
SMARCA1P28370 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMARCA1P28370 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.93■□□□□ 0.46
SMARCA1P28370 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.92■□□□□ 0.46
SMARCA1P28370 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SMARCA1P28370 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
SMARCA1P28370 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.92■□□□□ 0.46
SMARCA1P28370 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 ACKR1-201ENST00000368121 1240 ntBASIC17.92■□□□□ 0.46
SMARCA1P28370 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.92■□□□□ 0.46
SMARCA1P28370 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.92■□□□□ 0.46
SMARCA1P28370 GAPDHP21-201ENST00000450301 1010 ntBASIC17.92■□□□□ 0.46
SMARCA1P28370 RN7SL752P-201ENST00000463779 287 ntBASIC17.92■□□□□ 0.46
SMARCA1P28370 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.92■□□□□ 0.46
SMARCA1P28370 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.92■□□□□ 0.46
SMARCA1P28370 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.92■□□□□ 0.46
SMARCA1P28370 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SMARCA1P28370 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SMARCA1P28370 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.92■□□□□ 0.46
SMARCA1P28370 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SMARCA1P28370 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.91■□□□□ 0.46
SMARCA1P28370 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 SSR4P1-203ENST00000599569 2260 ntBASIC17.91■□□□□ 0.46
SMARCA1P28370 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SMARCA1P28370 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SMARCA1P28370 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.91■□□□□ 0.46
SMARCA1P28370 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.91■□□□□ 0.46
SMARCA1P28370 AC012645.4-201ENST00000610691 1061 ntBASIC17.91■□□□□ 0.46
SMARCA1P28370 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms