Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AC243562.2-201ENST00000561247 970 ntBASIC12.06□□□□□ -0.48
HLA-DMBP28068 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.06□□□□□ -0.48
HLA-DMBP28068 MIR4313-201ENST00000580760 101 ntBASIC12.06□□□□□ -0.48
HLA-DMBP28068 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 REXO1L1P-202ENST00000608646 1974 ntBASIC12.06□□□□□ -0.48
HLA-DMBP28068 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DMBP28068 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
HLA-DMBP28068 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 353.7 ms