Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC00982-205ENST00000420957 435 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 DANCR-204ENST00000444958 709 ntTSL 3 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 VENTXP7-201ENST00000475503 772 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AL121672.3-201ENST00000608644 468 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AL592071.1-201ENST00000611956 408 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AC124864.1-201ENST00000623408 392 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 CICP17-201ENST00000418553 2377 ntBASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DQA1P01909 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AC023024.2-201ENST00000623561 1993 ntBASIC11.91□□□□□ -0.5
HLA-DQA1P01909 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MEG3-211ENST00000452514 461 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 S100A2-206ENST00000497140 697 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 KRT8P26-201ENST00000534154 1276 ntBASIC11.91□□□□□ -0.5
HLA-DQA1P01909 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 AL445228.2-201ENST00000605589 952 ntBASIC11.91□□□□□ -0.5
HLA-DQA1P01909 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DQA1P01909 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms