Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
SHOX2O60902 AC018442.1-201ENST00000421439 2061 ntBASIC15.77■□□□□ 0.12
SHOX2O60902 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SHOX2O60902 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHOX2O60902 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SHOX2O60902 TMEM198B-204ENST00000484016 896 ntBASIC15.77■□□□□ 0.12
SHOX2O60902 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.77■□□□□ 0.12
SHOX2O60902 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.77■□□□□ 0.12
SHOX2O60902 BNIP3P18-201ENST00000593976 575 ntBASIC15.77■□□□□ 0.12
SHOX2O60902 AC021097.1-201ENST00000607902 574 ntBASIC15.77■□□□□ 0.12
SHOX2O60902 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SHOX2O60902 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.77■□□□□ 0.12
SHOX2O60902 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SHOX2O60902 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.77■□□□□ 0.11
SHOX2O60902 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.77■□□□□ 0.11
SHOX2O60902 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SHOX2O60902 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.77■□□□□ 0.11
SHOX2O60902 AC083964.2-201ENST00000623988 2396 ntBASIC15.77■□□□□ 0.11
SHOX2O60902 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.77■□□□□ 0.11
SHOX2O60902 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.77■□□□□ 0.11
SHOX2O60902 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.77■□□□□ 0.11
SHOX2O60902 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
SHOX2O60902 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHOX2O60902 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SHOX2O60902 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.76■□□□□ 0.11
SHOX2O60902 ABCD1P5-201ENST00000445663 754 ntBASIC15.76■□□□□ 0.11
SHOX2O60902 KRT18P21-201ENST00000515767 1272 ntBASIC15.76■□□□□ 0.11
SHOX2O60902 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.76■□□□□ 0.11
SHOX2O60902 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.76■□□□□ 0.11
SHOX2O60902 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
SHOX2O60902 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.76■□□□□ 0.11
SHOX2O60902 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SHOX2O60902 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.76■□□□□ 0.11
SHOX2O60902 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SHOX2O60902 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.76■□□□□ 0.11
SHOX2O60902 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SHOX2O60902 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
SHOX2O60902 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHOX2O60902 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.76■□□□□ 0.11
SHOX2O60902 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.75■□□□□ 0.11
SHOX2O60902 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.75■□□□□ 0.11
SHOX2O60902 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.75■□□□□ 0.11
SHOX2O60902 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms