Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 AC026150.2-201ENST00000564693 1156 ntBASIC13.9□□□□□ -0.18
LMX1BO60663 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 LINC02560-201ENST00000596379 459 ntBASIC13.9□□□□□ -0.18
LMX1BO60663 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 AC008761.3-201ENST00000624803 892 ntBASIC13.9□□□□□ -0.18
LMX1BO60663 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 BNIP3P1-202ENST00000550043 1585 ntBASIC13.9□□□□□ -0.18
LMX1BO60663 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 AC112693.3-201ENST00000624819 1983 ntBASIC13.9□□□□□ -0.18
LMX1BO60663 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
LMX1BO60663 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
LMX1BO60663 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.9□□□□□ -0.18
LMX1BO60663 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMX1BO60663 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.9□□□□□ -0.18
LMX1BO60663 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.19
LMX1BO60663 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
LMX1BO60663 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.9□□□□□ -0.19
LMX1BO60663 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.9□□□□□ -0.19
LMX1BO60663 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.9□□□□□ -0.19
LMX1BO60663 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
LMX1BO60663 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.89□□□□□ -0.19
LMX1BO60663 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.89□□□□□ -0.19
LMX1BO60663 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.89□□□□□ -0.19
LMX1BO60663 AC069120.2-201ENST00000524091 540 ntBASIC13.89□□□□□ -0.19
LMX1BO60663 AC061975.2-201ENST00000581722 295 ntBASIC13.89□□□□□ -0.19
LMX1BO60663 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 AL158211.3-201ENST00000607385 239 ntBASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms