Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC28.64■■■□□ 2.17
ZC3H4Q9UPT8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
ZC3H4Q9UPT8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ZC3H4Q9UPT8 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ZC3H4Q9UPT8 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 AL137784.2-201ENST00000607332 1000 ntBASIC28.62■■■□□ 2.17
ZC3H4Q9UPT8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ZC3H4Q9UPT8 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
ZC3H4Q9UPT8 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.61■■■□□ 2.17
ZC3H4Q9UPT8 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
ZC3H4Q9UPT8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.61■■■□□ 2.17
ZC3H4Q9UPT8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.6■■■□□ 2.17
ZC3H4Q9UPT8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.6■■■□□ 2.17
ZC3H4Q9UPT8 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
ZC3H4Q9UPT8 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.6■■■□□ 2.17
ZC3H4Q9UPT8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZC3H4Q9UPT8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.59■■■□□ 2.17
ZC3H4Q9UPT8 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.59■■■□□ 2.17
ZC3H4Q9UPT8 AC034268.1-201ENST00000441047 882 ntBASIC28.59■■■□□ 2.17
ZC3H4Q9UPT8 AC022517.1-201ENST00000592429 346 ntBASIC28.59■■■□□ 2.17
ZC3H4Q9UPT8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC28.59■■■□□ 2.17
ZC3H4Q9UPT8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 IKBKGP1-201ENST00000612193 1073 ntBASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
ZC3H4Q9UPT8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
ZC3H4Q9UPT8 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 AC011298.3-201ENST00000615796 283 ntBASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.56■■■□□ 2.16
ZC3H4Q9UPT8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 AL138724.1-201ENST00000606771 1088 ntBASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
ZC3H4Q9UPT8 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 ID1-201ENST00000376105 1233 ntBASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 SLC47A1P1-202ENST00000449666 945 ntBASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
ZC3H4Q9UPT8 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 AC139426.1-201ENST00000568218 2529 ntBASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 AC142472.1-201ENST00000612013 1741 ntBASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
ZC3H4Q9UPT8 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
ZC3H4Q9UPT8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.52■■■□□ 2.16
ZC3H4Q9UPT8 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.16
ZC3H4Q9UPT8 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 SERBP1P1-201ENST00000396021 1160 ntBASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
ZC3H4Q9UPT8 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC28.5■■■□□ 2.15
ZC3H4Q9UPT8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.5■■■□□ 2.15
ZC3H4Q9UPT8 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
ZC3H4Q9UPT8 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
ZC3H4Q9UPT8 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 LBH-205ENST00000407930 756 ntTSL 2 BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
ZC3H4Q9UPT8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.48■■■□□ 2.15
ZC3H4Q9UPT8 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
ZC3H4Q9UPT8 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.48■■■□□ 2.15
ZC3H4Q9UPT8 AC092437.1-201ENST00000624794 1048 ntBASIC28.48■■■□□ 2.15
ZC3H4Q9UPT8 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.48■■■□□ 2.15
ZC3H4Q9UPT8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 AC099791.1-201ENST00000416440 715 ntBASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms