Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.6■■□□□ 1.05
USE1Q9NZ43 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.6■■□□□ 1.05
USE1Q9NZ43 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
USE1Q9NZ43 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.6■■□□□ 1.05
USE1Q9NZ43 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USE1Q9NZ43 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
USE1Q9NZ43 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.59■■□□□ 1.05
USE1Q9NZ43 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.59■■□□□ 1.05
USE1Q9NZ43 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USE1Q9NZ43 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
USE1Q9NZ43 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
USE1Q9NZ43 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USE1Q9NZ43 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USE1Q9NZ43 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USE1Q9NZ43 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.58■■□□□ 1.05
USE1Q9NZ43 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.58■■□□□ 1.05
USE1Q9NZ43 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
USE1Q9NZ43 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USE1Q9NZ43 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USE1Q9NZ43 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
USE1Q9NZ43 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.57■■□□□ 1.04
USE1Q9NZ43 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USE1Q9NZ43 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USE1Q9NZ43 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USE1Q9NZ43 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
USE1Q9NZ43 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.56■■□□□ 1.04
USE1Q9NZ43 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
USE1Q9NZ43 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L13-201ENST00000554103 1267 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L15-201ENST00000611059 1267 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L23-201ENST00000615195 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L24-201ENST00000617576 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L22-201ENST00000618238 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L20-201ENST00000619712 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L21-201ENST00000622058 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L10-201ENST00000622460 1267 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 DUX4L25-201ENST00000624915 1269 ntBASIC21.55■■□□□ 1.04
USE1Q9NZ43 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
USE1Q9NZ43 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USE1Q9NZ43 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
USE1Q9NZ43 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.55■■□□□ 1.04
USE1Q9NZ43 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
USE1Q9NZ43 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USE1Q9NZ43 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USE1Q9NZ43 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.54■■□□□ 1.04
USE1Q9NZ43 HLA-L-211ENST00000482052 1765 ntBASIC21.53■■□□□ 1.04
USE1Q9NZ43 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USE1Q9NZ43 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.53■■□□□ 1.04
USE1Q9NZ43 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
USE1Q9NZ43 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USE1Q9NZ43 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.52■■□□□ 1.04
USE1Q9NZ43 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms