Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX3-1Q99801 C9orf163-202ENST00000624034 2573 ntBASIC20.26■□□□□ 0.83
NKX3-1Q99801 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NKX3-1Q99801 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.26■□□□□ 0.83
NKX3-1Q99801 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NKX3-1Q99801 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX3-1Q99801 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX3-1Q99801 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX3-1Q99801 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.25■□□□□ 0.83
NKX3-1Q99801 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.25■□□□□ 0.83
NKX3-1Q99801 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NKX3-1Q99801 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 AC092296.2-201ENST00000589470 999 ntBASIC20.24■□□□□ 0.83
NKX3-1Q99801 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NKX3-1Q99801 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NKX3-1Q99801 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NKX3-1Q99801 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX3-1Q99801 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX3-1Q99801 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX3-1Q99801 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX3-1Q99801 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.23■□□□□ 0.83
NKX3-1Q99801 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX3-1Q99801 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX3-1Q99801 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NKX3-1Q99801 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 AC068473.5-201ENST00000616428 2072 ntBASIC20.22■□□□□ 0.83
NKX3-1Q99801 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX3-1Q99801 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.21■□□□□ 0.83
NKX3-1Q99801 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NKX3-1Q99801 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX3-1Q99801 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX3-1Q99801 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
NKX3-1Q99801 GPX1-201ENST00000419349 1106 ntBASIC20.2■□□□□ 0.82
NKX3-1Q99801 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.2■□□□□ 0.82
NKX3-1Q99801 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
NKX3-1Q99801 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX3-1Q99801 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX3-1Q99801 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.19■□□□□ 0.82
NKX3-1Q99801 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX3-1Q99801 HLA-L-211ENST00000482052 1765 ntBASIC20.19■□□□□ 0.82
NKX3-1Q99801 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX3-1Q99801 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX3-1Q99801 AC093536.1-201ENST00000569153 554 ntBASIC20.19■□□□□ 0.82
NKX3-1Q99801 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.19■□□□□ 0.82
NKX3-1Q99801 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX3-1Q99801 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.18■□□□□ 0.82
NKX3-1Q99801 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
NKX3-1Q99801 AC022413.1-201ENST00000624602 984 ntBASIC20.18■□□□□ 0.82
NKX3-1Q99801 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX3-1Q99801 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
NKX3-1Q99801 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX3-1Q99801 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX3-1Q99801 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.17■□□□□ 0.82
NKX3-1Q99801 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX3-1Q99801 RP9P-202ENST00000450133 1212 ntBASIC20.16■□□□□ 0.82
NKX3-1Q99801 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 MIR6089-201ENST00000616698 64 ntBASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms