Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCHCR1Q8TD31 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
CCHCR1Q8TD31 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCHCR1Q8TD31 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
CCHCR1Q8TD31 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
CCHCR1Q8TD31 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCHCR1Q8TD31 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCHCR1Q8TD31 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCHCR1Q8TD31 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCHCR1Q8TD31 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCHCR1Q8TD31 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.18■■□□□ 1.46
CCHCR1Q8TD31 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 KRT18P60-201ENST00000312876 1297 ntBASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.17■■□□□ 1.46
CCHCR1Q8TD31 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.16■■□□□ 1.46
CCHCR1Q8TD31 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCHCR1Q8TD31 AC079834.2-201ENST00000609776 1949 ntBASIC24.16■■□□□ 1.46
CCHCR1Q8TD31 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCHCR1Q8TD31 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 KRT18P10-201ENST00000388836 1287 ntBASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.14■■□□□ 1.45
CCHCR1Q8TD31 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
CCHCR1Q8TD31 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 AC018755.3-202ENST00000596210 929 ntBASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCHCR1Q8TD31 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCHCR1Q8TD31 AC129492.7-201ENST00000622992 756 ntBASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms