Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
USP48Q86UV5 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP48Q86UV5 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP48Q86UV5 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP48Q86UV5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC28.63■■■□□ 2.17
USP48Q86UV5 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP48Q86UV5 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.62■■■□□ 2.17
USP48Q86UV5 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
USP48Q86UV5 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.62■■■□□ 2.17
USP48Q86UV5 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.62■■■□□ 2.17
USP48Q86UV5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.62■■■□□ 2.17
USP48Q86UV5 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.62■■■□□ 2.17
USP48Q86UV5 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USP48Q86UV5 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USP48Q86UV5 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.61■■■□□ 2.17
USP48Q86UV5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC28.61■■■□□ 2.17
USP48Q86UV5 RARRES2P6-201ENST00000567333 442 ntBASIC28.61■■■□□ 2.17
USP48Q86UV5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC28.61■■■□□ 2.17
USP48Q86UV5 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USP48Q86UV5 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
USP48Q86UV5 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
USP48Q86UV5 SENP5-202ENST00000419026 973 ntTSL 3 BASIC28.6■■■□□ 2.17
USP48Q86UV5 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.6■■■□□ 2.17
USP48Q86UV5 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
USP48Q86UV5 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.59■■■□□ 2.17
USP48Q86UV5 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USP48Q86UV5 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
USP48Q86UV5 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
USP48Q86UV5 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC28.59■■■□□ 2.17
USP48Q86UV5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC28.59■■■□□ 2.17
USP48Q86UV5 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USP48Q86UV5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP48Q86UV5 AL512631.2-201ENST00000604634 923 ntBASIC28.58■■■□□ 2.17
USP48Q86UV5 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP48Q86UV5 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
USP48Q86UV5 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP48Q86UV5 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
USP48Q86UV5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC28.57■■■□□ 2.16
USP48Q86UV5 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP48Q86UV5 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP48Q86UV5 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP48Q86UV5 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
USP48Q86UV5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC28.56■■■□□ 2.16
USP48Q86UV5 AK3-203ENST00000447596 705 ntTSL 2 BASIC28.56■■■□□ 2.16
USP48Q86UV5 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
USP48Q86UV5 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
USP48Q86UV5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USP48Q86UV5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC28.55■■■□□ 2.16
USP48Q86UV5 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USP48Q86UV5 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
USP48Q86UV5 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USP48Q86UV5 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USP48Q86UV5 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC28.54■■■□□ 2.16
USP48Q86UV5 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
USP48Q86UV5 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
USP48Q86UV5 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.54■■■□□ 2.16
USP48Q86UV5 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP48Q86UV5 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC28.53■■■□□ 2.16
USP48Q86UV5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP48Q86UV5 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC28.53■■■□□ 2.16
USP48Q86UV5 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC28.53■■■□□ 2.16
USP48Q86UV5 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP48Q86UV5 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.53■■■□□ 2.16
USP48Q86UV5 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP48Q86UV5 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP48Q86UV5 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
USP48Q86UV5 PBX2P1-201ENST00000493219 1291 ntBASIC28.52■■■□□ 2.16
USP48Q86UV5 RASSF1-AS1-201ENST00000629828 790 ntBASIC28.52■■■□□ 2.16
USP48Q86UV5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
USP48Q86UV5 TK2-202ENST00000417693 1046 ntTSL 2 BASIC28.51■■■□□ 2.15
USP48Q86UV5 AC026271.2-201ENST00000428091 497 ntBASIC28.51■■■□□ 2.15
USP48Q86UV5 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.51■■■□□ 2.15
USP48Q86UV5 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.51■■■□□ 2.15
USP48Q86UV5 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
USP48Q86UV5 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.51■■■□□ 2.15
USP48Q86UV5 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC28.5■■■□□ 2.15
USP48Q86UV5 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
USP48Q86UV5 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP48Q86UV5 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.49■■■□□ 2.15
USP48Q86UV5 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.49■■■□□ 2.15
USP48Q86UV5 AC142381.2-201ENST00000566120 298 ntBASIC28.49■■■□□ 2.15
USP48Q86UV5 AC106739.1-201ENST00000617035 715 ntBASIC28.49■■■□□ 2.15
USP48Q86UV5 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC28.49■■■□□ 2.15
USP48Q86UV5 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP48Q86UV5 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP48Q86UV5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
USP48Q86UV5 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
USP48Q86UV5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP48Q86UV5 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC28.47■■■□□ 2.15
USP48Q86UV5 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms