Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.73■■■□□ 2.67
USP54Q70EL1 MIR6722-201ENST00000617286 78 ntBASIC31.73■■■□□ 2.67
USP54Q70EL1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.72■■■□□ 2.67
USP54Q70EL1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP54Q70EL1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC31.72■■■□□ 2.67
USP54Q70EL1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC31.72■■■□□ 2.67
USP54Q70EL1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.72■■■□□ 2.67
USP54Q70EL1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
USP54Q70EL1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP54Q70EL1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
USP54Q70EL1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
USP54Q70EL1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.67
USP54Q70EL1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP54Q70EL1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.7■■■□□ 2.66
USP54Q70EL1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.66
USP54Q70EL1 MIR935-201ENST00000401179 91 ntBASIC31.7■■■□□ 2.66
USP54Q70EL1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.69■■■□□ 2.66
USP54Q70EL1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
USP54Q70EL1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
USP54Q70EL1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
USP54Q70EL1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
USP54Q70EL1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.68■■■□□ 2.66
USP54Q70EL1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP54Q70EL1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.68■■■□□ 2.66
USP54Q70EL1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP54Q70EL1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP54Q70EL1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.67■■■□□ 2.66
USP54Q70EL1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
USP54Q70EL1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
USP54Q70EL1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP54Q70EL1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP54Q70EL1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.65■■■□□ 2.66
USP54Q70EL1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USP54Q70EL1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
USP54Q70EL1 AC133561.4-201ENST00000566112 224 ntBASIC31.65■■■□□ 2.66
USP54Q70EL1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.65■■■□□ 2.66
USP54Q70EL1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USP54Q70EL1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
USP54Q70EL1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.64■■■□□ 2.66
USP54Q70EL1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC31.64■■■□□ 2.66
USP54Q70EL1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.64■■■□□ 2.66
USP54Q70EL1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.64■■■□□ 2.65
USP54Q70EL1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
USP54Q70EL1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.64■■■□□ 2.65
USP54Q70EL1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC31.64■■■□□ 2.65
USP54Q70EL1 MIR6089-201ENST00000616698 64 ntBASIC31.64■■■□□ 2.65
USP54Q70EL1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.63■■■□□ 2.65
USP54Q70EL1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.63■■■□□ 2.65
USP54Q70EL1 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP54Q70EL1 AL031432.3-201ENST00000607698 485 ntBASIC31.62■■■□□ 2.65
USP54Q70EL1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC31.62■■■□□ 2.65
USP54Q70EL1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP54Q70EL1 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
USP54Q70EL1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP54Q70EL1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC31.62■■■□□ 2.65
USP54Q70EL1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP54Q70EL1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
USP54Q70EL1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP54Q70EL1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP54Q70EL1 AC131274.2-201ENST00000580697 1507 ntBASIC31.6■■■□□ 2.65
USP54Q70EL1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP54Q70EL1 AC106739.1-201ENST00000617035 715 ntBASIC31.6■■■□□ 2.65
USP54Q70EL1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP54Q70EL1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC31.6■■■□□ 2.65
USP54Q70EL1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC31.6■■■□□ 2.65
USP54Q70EL1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP54Q70EL1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
USP54Q70EL1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP54Q70EL1 AC004448.1-201ENST00000458332 883 ntBASIC31.57■■■□□ 2.65
USP54Q70EL1 SUDS3P1-201ENST00000505831 966 ntBASIC31.57■■■□□ 2.65
USP54Q70EL1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
USP54Q70EL1 AC092803.2-201ENST00000564287 1899 ntBASIC31.57■■■□□ 2.64
USP54Q70EL1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP54Q70EL1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
USP54Q70EL1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP54Q70EL1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP54Q70EL1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC31.56■■■□□ 2.64
USP54Q70EL1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP54Q70EL1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC31.55■■■□□ 2.64
USP54Q70EL1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
USP54Q70EL1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP54Q70EL1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC31.55■■■□□ 2.64
USP54Q70EL1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.55■■■□□ 2.64
USP54Q70EL1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP54Q70EL1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.55■■■□□ 2.64
USP54Q70EL1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP54Q70EL1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.55■■■□□ 2.64
USP54Q70EL1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.55■■■□□ 2.64
USP54Q70EL1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC31.54■■■□□ 2.64
USP54Q70EL1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP54Q70EL1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
USP54Q70EL1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
USP54Q70EL1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.54■■■□□ 2.64
USP54Q70EL1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms