Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RPUSD3Q6P087 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RPUSD3Q6P087 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 AC133561.4-201ENST00000566112 224 ntBASIC21.35■■□□□ 1.01
RPUSD3Q6P087 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 MIR4466-201ENST00000606121 54 ntBASIC21.35■■□□□ 1.01
RPUSD3Q6P087 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPUSD3Q6P087 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 AL512631.2-201ENST00000604634 923 ntBASIC21.34■■□□□ 1.01
RPUSD3Q6P087 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 MIR6722-201ENST00000617286 78 ntBASIC21.34■■□□□ 1.01
RPUSD3Q6P087 AC110285.6-201ENST00000617652 491 ntBASIC21.34■■□□□ 1.01
RPUSD3Q6P087 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.34■■□□□ 1.01
RPUSD3Q6P087 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 AC090877.2-201ENST00000558441 1738 ntBASIC21.33■■□□□ 1.01
RPUSD3Q6P087 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.33■■□□□ 1.01
RPUSD3Q6P087 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RPUSD3Q6P087 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
RPUSD3Q6P087 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.33■■□□□ 1
RPUSD3Q6P087 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPUSD3Q6P087 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPUSD3Q6P087 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.32■■□□□ 1
RPUSD3Q6P087 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.32■■□□□ 1
RPUSD3Q6P087 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.32■■□□□ 1
RPUSD3Q6P087 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.32■■□□□ 1
RPUSD3Q6P087 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPUSD3Q6P087 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.32■■□□□ 1
RPUSD3Q6P087 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RPUSD3Q6P087 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPUSD3Q6P087 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.31■■□□□ 1
RPUSD3Q6P087 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.31■■□□□ 1
RPUSD3Q6P087 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPUSD3Q6P087 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPUSD3Q6P087 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPUSD3Q6P087 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RPUSD3Q6P087 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.3■■□□□ 1
RPUSD3Q6P087 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
RPUSD3Q6P087 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPUSD3Q6P087 AC096631.2-201ENST00000436136 790 ntBASIC21.3■■□□□ 1
RPUSD3Q6P087 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPUSD3Q6P087 AC005837.3-201ENST00000612163 286 ntBASIC21.3■■□□□ 1
RPUSD3Q6P087 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPUSD3Q6P087 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
RPUSD3Q6P087 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.3■■□□□ 1
RPUSD3Q6P087 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.3■■□□□ 1
RPUSD3Q6P087 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.29■■□□□ 1
RPUSD3Q6P087 SNX5-217ENST00000606557 1087 ntBASIC21.29■■□□□ 1
RPUSD3Q6P087 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RPUSD3Q6P087 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.29■■□□□ 1
RPUSD3Q6P087 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.29■■□□□ 1
RPUSD3Q6P087 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.29■■□□□ 1
RPUSD3Q6P087 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RPUSD3Q6P087 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RPUSD3Q6P087 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.28■■□□□ 1
RPUSD3Q6P087 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.28■■□□□ 1
RPUSD3Q6P087 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RPUSD3Q6P087 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
RPUSD3Q6P087 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RPUSD3Q6P087 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
RPUSD3Q6P087 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RPUSD3Q6P087 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RPUSD3Q6P087 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.27■■□□□ 1
RPUSD3Q6P087 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
RPUSD3Q6P087 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.27■■□□□ 1
RPUSD3Q6P087 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.27■■□□□ 1
RPUSD3Q6P087 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RPUSD3Q6P087 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms