Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
H3F3AP84243 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
H3F3AP84243 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
H3F3AP84243 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
H3F3AP84243 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
H3F3AP84243 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
H3F3AP84243 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
H3F3AP84243 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
H3F3AP84243 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
H3F3AP84243 KRT8P33-201ENST00000508125 1423 ntBASIC20.91■□□□□ 0.94
H3F3AP84243 AC103724.3-201ENST00000564481 992 ntBASIC20.91■□□□□ 0.94
H3F3AP84243 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.91■□□□□ 0.94
H3F3AP84243 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.91■□□□□ 0.94
H3F3AP84243 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.91■□□□□ 0.94
H3F3AP84243 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
H3F3AP84243 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.9■□□□□ 0.94
H3F3AP84243 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.9■□□□□ 0.94
H3F3AP84243 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 AC120024.1-201ENST00000562672 995 ntBASIC20.9■□□□□ 0.94
H3F3AP84243 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
H3F3AP84243 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
H3F3AP84243 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.89■□□□□ 0.94
H3F3AP84243 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.89■□□□□ 0.93
H3F3AP84243 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
H3F3AP84243 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
H3F3AP84243 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
H3F3AP84243 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
H3F3AP84243 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
H3F3AP84243 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
H3F3AP84243 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
H3F3AP84243 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
H3F3AP84243 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
H3F3AP84243 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
H3F3AP84243 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.87■□□□□ 0.93
H3F3AP84243 RARRES2P1-201ENST00000474487 481 ntBASIC20.87■□□□□ 0.93
H3F3AP84243 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
H3F3AP84243 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.87■□□□□ 0.93
H3F3AP84243 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
H3F3AP84243 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.87■□□□□ 0.93
H3F3AP84243 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
H3F3AP84243 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
H3F3AP84243 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.86■□□□□ 0.93
H3F3AP84243 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.86■□□□□ 0.93
H3F3AP84243 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 THA1P-201ENST00000590384 1145 ntBASIC20.86■□□□□ 0.93
H3F3AP84243 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
H3F3AP84243 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
H3F3AP84243 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.86■□□□□ 0.93
H3F3AP84243 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
H3F3AP84243 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.85■□□□□ 0.93
H3F3AP84243 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
H3F3AP84243 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.85■□□□□ 0.93
H3F3AP84243 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
H3F3AP84243 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
H3F3AP84243 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
H3F3AP84243 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
H3F3AP84243 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
H3F3AP84243 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.84■□□□□ 0.93
H3F3AP84243 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
H3F3AP84243 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
H3F3AP84243 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
H3F3AP84243 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
H3F3AP84243 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
H3F3AP84243 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
H3F3AP84243 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
H3F3AP84243 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
H3F3AP84243 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
H3F3AP84243 AL031848.2-201ENST00000607670 837 ntBASIC20.82■□□□□ 0.92
H3F3AP84243 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
H3F3AP84243 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
H3F3AP84243 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.82■□□□□ 0.92
H3F3AP84243 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.81■□□□□ 0.92
H3F3AP84243 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.81■□□□□ 0.92
H3F3AP84243 MIR4281-201ENST00000580852 62 ntBASIC20.81■□□□□ 0.92
H3F3AP84243 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.81■□□□□ 0.92
H3F3AP84243 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.81■□□□□ 0.92
H3F3AP84243 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
H3F3AP84243 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.8■□□□□ 0.92
H3F3AP84243 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.8■□□□□ 0.92
H3F3AP84243 HLA-L-211ENST00000482052 1765 ntBASIC20.8■□□□□ 0.92
H3F3AP84243 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.8■□□□□ 0.92
H3F3AP84243 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
H3F3AP84243 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms