Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.69■■□□□ 1.06
CDH12P55289 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.69■■□□□ 1.06
CDH12P55289 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH12P55289 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH12P55289 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH12P55289 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.68■■□□□ 1.06
CDH12P55289 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.68■■□□□ 1.06
CDH12P55289 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CDH12P55289 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH12P55289 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH12P55289 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CDH12P55289 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH12P55289 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH12P55289 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.66■■□□□ 1.06
CDH12P55289 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CDH12P55289 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH12P55289 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH12P55289 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.66■■□□□ 1.06
CDH12P55289 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH12P55289 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.65■■□□□ 1.06
CDH12P55289 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH12P55289 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH12P55289 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.65■■□□□ 1.06
CDH12P55289 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.65■■□□□ 1.06
CDH12P55289 RAP2CP1-202ENST00000605179 643 ntBASIC21.65■■□□□ 1.06
CDH12P55289 MIR6089-201ENST00000616698 64 ntBASIC21.65■■□□□ 1.06
CDH12P55289 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.65■■□□□ 1.06
CDH12P55289 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CDH12P55289 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.65■■□□□ 1.06
CDH12P55289 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.65■■□□□ 1.06
CDH12P55289 AC012676.1-201ENST00000574705 1949 ntBASIC21.65■■□□□ 1.06
CDH12P55289 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CDH12P55289 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CDH12P55289 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH12P55289 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.64■■□□□ 1.05
CDH12P55289 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CDH12P55289 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CDH12P55289 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
CDH12P55289 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH12P55289 AC068473.5-201ENST00000616428 2072 ntBASIC21.64■■□□□ 1.05
CDH12P55289 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH12P55289 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.63■■□□□ 1.05
CDH12P55289 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH12P55289 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH12P55289 ABCB10P4-201ENST00000566803 2184 ntBASIC21.63■■□□□ 1.05
CDH12P55289 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
CDH12P55289 AC026202.3-201ENST00000600805 1127 ntBASIC21.63■■□□□ 1.05
CDH12P55289 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH12P55289 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH12P55289 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
CDH12P55289 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH12P55289 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CDH12P55289 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDH12P55289 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDH12P55289 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH12P55289 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.61■■□□□ 1.05
CDH12P55289 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.61■■□□□ 1.05
CDH12P55289 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.61■■□□□ 1.05
CDH12P55289 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.61■■□□□ 1.05
CDH12P55289 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CDH12P55289 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CDH12P55289 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH12P55289 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH12P55289 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CDH12P55289 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.6■■□□□ 1.05
CDH12P55289 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CDH12P55289 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH12P55289 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH12P55289 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH12P55289 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH12P55289 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CDH12P55289 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.59■■□□□ 1.05
CDH12P55289 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 DUSP8P5-201ENST00000422884 1815 ntBASIC21.59■■□□□ 1.05
CDH12P55289 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH12P55289 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CDH12P55289 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.58■■□□□ 1.05
CDH12P55289 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CDH12P55289 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH12P55289 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CDH12P55289 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDH12P55289 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH12P55289 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
CDH12P55289 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH12P55289 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms