Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM4P50479 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM4P50479 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.77■□□□□ 0.76
PDLIM4P50479 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM4P50479 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.77■□□□□ 0.76
PDLIM4P50479 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
PDLIM4P50479 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
PDLIM4P50479 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.76■□□□□ 0.75
PDLIM4P50479 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.76■□□□□ 0.75
PDLIM4P50479 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.76■□□□□ 0.75
PDLIM4P50479 AL356740.2-201ENST00000601559 647 ntBASIC19.76■□□□□ 0.75
PDLIM4P50479 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM4P50479 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.76■□□□□ 0.75
PDLIM4P50479 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.76■□□□□ 0.75
PDLIM4P50479 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.75■□□□□ 0.75
PDLIM4P50479 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.75■□□□□ 0.75
PDLIM4P50479 AL117332.1-201ENST00000622628 974 ntBASIC19.75■□□□□ 0.75
PDLIM4P50479 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM4P50479 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.74■□□□□ 0.75
PDLIM4P50479 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM4P50479 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM4P50479 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM4P50479 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM4P50479 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PDLIM4P50479 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM4P50479 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM4P50479 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM4P50479 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM4P50479 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM4P50479 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM4P50479 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM4P50479 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PDLIM4P50479 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.73■□□□□ 0.75
PDLIM4P50479 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM4P50479 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.73■□□□□ 0.75
PDLIM4P50479 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM4P50479 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM4P50479 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM4P50479 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM4P50479 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM4P50479 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.72■□□□□ 0.75
PDLIM4P50479 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
PDLIM4P50479 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.72■□□□□ 0.75
PDLIM4P50479 AC131281.2-201ENST00000520478 145 ntBASIC19.72■□□□□ 0.75
PDLIM4P50479 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.72■□□□□ 0.75
PDLIM4P50479 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.72■□□□□ 0.75
PDLIM4P50479 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.72■□□□□ 0.75
PDLIM4P50479 MIR3621-201ENST00000580529 85 ntBASIC19.72■□□□□ 0.75
PDLIM4P50479 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM4P50479 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PDLIM4P50479 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM4P50479 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM4P50479 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM4P50479 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.71■□□□□ 0.75
PDLIM4P50479 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM4P50479 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.71■□□□□ 0.75
PDLIM4P50479 AL136116.3-201ENST00000402907 1138 ntBASIC19.71■□□□□ 0.75
PDLIM4P50479 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PDLIM4P50479 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM4P50479 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM4P50479 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM4P50479 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM4P50479 AF131216.4-201ENST00000638924 1588 ntBASIC19.7■□□□□ 0.74
PDLIM4P50479 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM4P50479 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.7■□□□□ 0.74
PDLIM4P50479 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM4P50479 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.7■□□□□ 0.74
PDLIM4P50479 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PDLIM4P50479 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.7■□□□□ 0.74
PDLIM4P50479 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM4P50479 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PDLIM4P50479 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM4P50479 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM4P50479 AC097639.1-201ENST00000565519 1891 ntBASIC19.69■□□□□ 0.74
PDLIM4P50479 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PDLIM4P50479 AC090877.2-201ENST00000558441 1738 ntBASIC19.69■□□□□ 0.74
PDLIM4P50479 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms