Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CXCL12P48061 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CXCL12P48061 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CXCL12P48061 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.57■■□□□ 1.36
CXCL12P48061 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CXCL12P48061 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CXCL12P48061 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.57■■□□□ 1.36
CXCL12P48061 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.57■■□□□ 1.36
CXCL12P48061 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.57■■□□□ 1.36
CXCL12P48061 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.57■■□□□ 1.36
CXCL12P48061 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CXCL12P48061 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
CXCL12P48061 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CXCL12P48061 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.56■■□□□ 1.36
CXCL12P48061 AC004448.1-201ENST00000458332 883 ntBASIC23.56■■□□□ 1.36
CXCL12P48061 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CXCL12P48061 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CXCL12P48061 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.55■■□□□ 1.36
CXCL12P48061 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CXCL12P48061 MIR939-201ENST00000401314 82 ntBASIC23.55■■□□□ 1.36
CXCL12P48061 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.55■■□□□ 1.36
CXCL12P48061 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.55■■□□□ 1.36
CXCL12P48061 MIR6821-201ENST00000617625 74 ntBASIC23.55■■□□□ 1.36
CXCL12P48061 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.55■■□□□ 1.36
CXCL12P48061 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CXCL12P48061 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CXCL12P48061 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CXCL12P48061 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.54■■□□□ 1.36
CXCL12P48061 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC23.54■■□□□ 1.36
CXCL12P48061 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.54■■□□□ 1.36
CXCL12P48061 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CXCL12P48061 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CXCL12P48061 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CXCL12P48061 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.53■■□□□ 1.36
CXCL12P48061 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.53■■□□□ 1.36
CXCL12P48061 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.53■■□□□ 1.36
CXCL12P48061 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.53■■□□□ 1.36
CXCL12P48061 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CXCL12P48061 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.52■■□□□ 1.36
CXCL12P48061 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.52■■□□□ 1.36
CXCL12P48061 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CXCL12P48061 AC091305.1-201ENST00000479476 895 ntBASIC23.52■■□□□ 1.36
CXCL12P48061 AP001330.3-201ENST00000520123 633 ntBASIC23.52■■□□□ 1.36
CXCL12P48061 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CXCL12P48061 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.52■■□□□ 1.36
CXCL12P48061 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CXCL12P48061 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
CXCL12P48061 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CXCL12P48061 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CXCL12P48061 AC097381.1-201ENST00000429019 1296 ntBASIC23.51■■□□□ 1.35
CXCL12P48061 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CXCL12P48061 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.51■■□□□ 1.35
CXCL12P48061 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
CXCL12P48061 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CXCL12P48061 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.51■■□□□ 1.35
CXCL12P48061 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CXCL12P48061 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.51■■□□□ 1.35
CXCL12P48061 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CXCL12P48061 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CXCL12P48061 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.5■■□□□ 1.35
CXCL12P48061 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.5■■□□□ 1.35
CXCL12P48061 SYT6-210ENST00000641643 1587 ntBASIC23.49■■□□□ 1.35
CXCL12P48061 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CXCL12P48061 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CXCL12P48061 AC092171.4-201ENST00000609130 632 ntBASIC23.49■■□□□ 1.35
CXCL12P48061 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
CXCL12P48061 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CXCL12P48061 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.49■■□□□ 1.35
CXCL12P48061 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CXCL12P48061 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.48■■□□□ 1.35
CXCL12P48061 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CXCL12P48061 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CXCL12P48061 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.48■■□□□ 1.35
CXCL12P48061 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.48■■□□□ 1.35
CXCL12P48061 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
CXCL12P48061 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CXCL12P48061 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.48■■□□□ 1.35
CXCL12P48061 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CXCL12P48061 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CXCL12P48061 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.47■■□□□ 1.35
CXCL12P48061 AC005703.6-201ENST00000623265 1329 ntBASIC23.47■■□□□ 1.35
CXCL12P48061 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CXCL12P48061 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CXCL12P48061 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.47■■□□□ 1.35
CXCL12P48061 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CXCL12P48061 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CXCL12P48061 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CXCL12P48061 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.46■■□□□ 1.35
CXCL12P48061 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
CXCL12P48061 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CXCL12P48061 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.46■■□□□ 1.35
CXCL12P48061 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.46■■□□□ 1.35
CXCL12P48061 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.46■■□□□ 1.35
CXCL12P48061 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.45■■□□□ 1.34
CXCL12P48061 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms