Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL18A1P39060 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.44■■■□□ 2.62
COL18A1P39060 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
COL18A1P39060 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL18A1P39060 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL18A1P39060 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
COL18A1P39060 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.43■■■□□ 2.62
COL18A1P39060 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL18A1P39060 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
COL18A1P39060 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC31.42■■■□□ 2.62
COL18A1P39060 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL18A1P39060 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL18A1P39060 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC31.41■■■□□ 2.62
COL18A1P39060 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.41■■■□□ 2.62
COL18A1P39060 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL18A1P39060 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL18A1P39060 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL18A1P39060 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL18A1P39060 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.4■■■□□ 2.62
COL18A1P39060 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL18A1P39060 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.4■■■□□ 2.62
COL18A1P39060 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
COL18A1P39060 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL18A1P39060 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC31.39■■■□□ 2.62
COL18A1P39060 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL18A1P39060 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL18A1P39060 EDA-201ENST00000338901 1233 ntBASIC31.38■■■□□ 2.61
COL18A1P39060 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC31.38■■■□□ 2.61
COL18A1P39060 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL18A1P39060 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL18A1P39060 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL18A1P39060 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL18A1P39060 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL18A1P39060 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC31.37■■■□□ 2.61
COL18A1P39060 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL18A1P39060 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.36■■■□□ 2.61
COL18A1P39060 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.36■■■□□ 2.61
COL18A1P39060 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL18A1P39060 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.35■■■□□ 2.61
COL18A1P39060 AC105265.2-201ENST00000467189 838 ntBASIC31.35■■■□□ 2.61
COL18A1P39060 AP001330.3-201ENST00000520123 633 ntBASIC31.35■■■□□ 2.61
COL18A1P39060 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC31.35■■■□□ 2.61
COL18A1P39060 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
COL18A1P39060 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL18A1P39060 GATM-206ENST00000558336 1522 ntTSL 2 BASIC31.34■■■□□ 2.61
COL18A1P39060 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.34■■■□□ 2.61
COL18A1P39060 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL18A1P39060 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL18A1P39060 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL18A1P39060 MIR939-201ENST00000401314 82 ntBASIC31.33■■■□□ 2.61
COL18A1P39060 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL18A1P39060 AC104564.3-201ENST00000582367 638 ntBASIC31.33■■■□□ 2.61
COL18A1P39060 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.33■■■□□ 2.61
COL18A1P39060 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.33■■■□□ 2.61
COL18A1P39060 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL18A1P39060 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
COL18A1P39060 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.61
COL18A1P39060 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL18A1P39060 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.32■■■□□ 2.6
COL18A1P39060 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
COL18A1P39060 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.32■■■□□ 2.6
COL18A1P39060 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC31.32■■■□□ 2.6
COL18A1P39060 SF1-220ENST00000626028 704 ntTSL 2 BASIC31.32■■■□□ 2.6
COL18A1P39060 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL18A1P39060 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
COL18A1P39060 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC31.31■■■□□ 2.6
COL18A1P39060 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL18A1P39060 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL18A1P39060 AF213884.3-201ENST00000563833 479 ntBASIC31.31■■■□□ 2.6
COL18A1P39060 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL18A1P39060 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.31■■■□□ 2.6
COL18A1P39060 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL18A1P39060 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
COL18A1P39060 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL18A1P39060 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL18A1P39060 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
COL18A1P39060 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.3■■■□□ 2.6
COL18A1P39060 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC31.3■■■□□ 2.6
COL18A1P39060 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
COL18A1P39060 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC31.3■■■□□ 2.6
COL18A1P39060 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.3■■■□□ 2.6
COL18A1P39060 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL18A1P39060 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC31.29■■■□□ 2.6
COL18A1P39060 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC31.29■■■□□ 2.6
COL18A1P39060 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
COL18A1P39060 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL18A1P39060 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL18A1P39060 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
COL18A1P39060 AC092666.2-201ENST00000613287 246 ntBASIC31.28■■■□□ 2.6
COL18A1P39060 AL136967.2-201ENST00000623968 743 ntBASIC31.28■■■□□ 2.6
COL18A1P39060 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL18A1P39060 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL18A1P39060 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC31.28■■■□□ 2.6
COL18A1P39060 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL18A1P39060 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.28■■■□□ 2.6
COL18A1P39060 ERN1-208ENST00000606895 2068 ntBASIC31.27■■■□□ 2.6
COL18A1P39060 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL18A1P39060 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.27■■■□□ 2.6
COL18A1P39060 AC004448.1-201ENST00000458332 883 ntBASIC31.27■■■□□ 2.6
COL18A1P39060 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.27■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms