Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ATF4P18848 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATF4P18848 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATF4P18848 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.28■□□□□ 0.68
ATF4P18848 AC007375.3-201ENST00000600936 2314 ntBASIC19.28■□□□□ 0.68
ATF4P18848 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.28■□□□□ 0.68
ATF4P18848 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
ATF4P18848 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATF4P18848 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATF4P18848 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATF4P18848 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ATF4P18848 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATF4P18848 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
ATF4P18848 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ATF4P18848 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATF4P18848 AC138932.3-201ENST00000567634 1902 ntBASIC19.27■□□□□ 0.67
ATF4P18848 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
ATF4P18848 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATF4P18848 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ATF4P18848 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATF4P18848 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ATF4P18848 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATF4P18848 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19.26■□□□□ 0.67
ATF4P18848 MIR6090-201ENST00000622481 60 ntBASIC19.26■□□□□ 0.67
ATF4P18848 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATF4P18848 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ATF4P18848 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ATF4P18848 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.26■□□□□ 0.67
ATF4P18848 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.26■□□□□ 0.67
ATF4P18848 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.26■□□□□ 0.67
ATF4P18848 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATF4P18848 WHAMMP2-203ENST00000563942 1603 ntBASIC19.25■□□□□ 0.67
ATF4P18848 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
ATF4P18848 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
ATF4P18848 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
ATF4P18848 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATF4P18848 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
ATF4P18848 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATF4P18848 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ATF4P18848 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 LINC00273-201ENST00000539813 1452 ntBASIC19.24■□□□□ 0.67
ATF4P18848 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC19.24■□□□□ 0.67
ATF4P18848 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.24■□□□□ 0.67
ATF4P18848 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATF4P18848 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
ATF4P18848 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ATF4P18848 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.23■□□□□ 0.67
ATF4P18848 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.23■□□□□ 0.67
ATF4P18848 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
ATF4P18848 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
ATF4P18848 AC018358.1-201ENST00000631079 1402 ntBASIC19.23■□□□□ 0.67
ATF4P18848 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATF4P18848 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC19.22■□□□□ 0.67
ATF4P18848 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.22■□□□□ 0.67
ATF4P18848 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.22■□□□□ 0.67
ATF4P18848 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATF4P18848 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATF4P18848 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATF4P18848 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
ATF4P18848 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATF4P18848 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATF4P18848 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ATF4P18848 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATF4P18848 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ATF4P18848 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ATF4P18848 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.2■□□□□ 0.66
ATF4P18848 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATF4P18848 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms