Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
PCF11O94913 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC36.99■■■■□ 3.51
PCF11O94913 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
PCF11O94913 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC36.99■■■■□ 3.51
PCF11O94913 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC36.99■■■■□ 3.51
PCF11O94913 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
PCF11O94913 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC36.98■■■■□ 3.51
PCF11O94913 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC36.98■■■■□ 3.51
PCF11O94913 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC36.98■■■■□ 3.51
PCF11O94913 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC36.98■■■■□ 3.51
PCF11O94913 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC36.98■■■■□ 3.51
PCF11O94913 RARRES2P6-201ENST00000567333 442 ntBASIC36.97■■■■□ 3.51
PCF11O94913 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
PCF11O94913 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC36.96■■■■□ 3.51
PCF11O94913 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC36.96■■■■□ 3.51
PCF11O94913 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC36.96■■■■□ 3.51
PCF11O94913 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC36.96■■■■□ 3.51
PCF11O94913 CLTA-206ENST00000466396 695 ntTSL 2 BASIC36.95■■■■□ 3.51
PCF11O94913 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
PCF11O94913 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC36.95■■■■□ 3.51
PCF11O94913 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
PCF11O94913 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC36.94■■■■□ 3.5
PCF11O94913 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC36.93■■■■□ 3.5
PCF11O94913 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
PCF11O94913 AL136116.3-201ENST00000402907 1138 ntBASIC36.93■■■■□ 3.5
PCF11O94913 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
PCF11O94913 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
PCF11O94913 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC36.92■■■■□ 3.5
PCF11O94913 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC36.92■■■■□ 3.5
PCF11O94913 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC36.92■■■■□ 3.5
PCF11O94913 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC36.92■■■■□ 3.5
PCF11O94913 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC36.92■■■■□ 3.5
PCF11O94913 TFPT-201ENST00000391757 774 ntTSL 5 BASIC36.91■■■■□ 3.5
PCF11O94913 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC36.91■■■■□ 3.5
PCF11O94913 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
PCF11O94913 AC110285.6-201ENST00000617652 491 ntBASIC36.89■■■■□ 3.5
PCF11O94913 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC36.89■■■■□ 3.5
PCF11O94913 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
PCF11O94913 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC36.88■■■■□ 3.49
PCF11O94913 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC36.88■■■■□ 3.49
PCF11O94913 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC36.87■■■■□ 3.49
PCF11O94913 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
PCF11O94913 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
PCF11O94913 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC36.85■■■■□ 3.49
PCF11O94913 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
PCF11O94913 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
PCF11O94913 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC36.85■■■■□ 3.49
PCF11O94913 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC36.84■■■■□ 3.49
PCF11O94913 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC36.83■■■■□ 3.49
PCF11O94913 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC36.83■■■■□ 3.49
PCF11O94913 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
PCF11O94913 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
PCF11O94913 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC36.83■■■■□ 3.49
PCF11O94913 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC36.83■■■■□ 3.49
PCF11O94913 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
PCF11O94913 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
PCF11O94913 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC36.83■■■■□ 3.49
PCF11O94913 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
PCF11O94913 AK3-203ENST00000447596 705 ntTSL 2 BASIC36.83■■■■□ 3.49
PCF11O94913 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
PCF11O94913 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
PCF11O94913 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC36.81■■■■□ 3.48
PCF11O94913 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC36.81■■■■□ 3.48
PCF11O94913 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC36.81■■■■□ 3.48
PCF11O94913 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
PCF11O94913 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
PCF11O94913 AC104564.3-201ENST00000582367 638 ntBASIC36.81■■■■□ 3.48
PCF11O94913 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC36.81■■■■□ 3.48
PCF11O94913 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC36.81■■■■□ 3.48
PCF11O94913 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC36.8■■■■□ 3.48
PCF11O94913 MIR6089-201ENST00000616698 64 ntBASIC36.8■■■■□ 3.48
PCF11O94913 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC36.8■■■■□ 3.48
PCF11O94913 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
PCF11O94913 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
PCF11O94913 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC36.78■■■■□ 3.48
PCF11O94913 GUK1-205ENST00000366722 850 ntTSL 3 BASIC36.78■■■■□ 3.48
PCF11O94913 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC36.78■■■■□ 3.48
PCF11O94913 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC36.78■■■■□ 3.48
PCF11O94913 DUSP8P4-201ENST00000399538 1761 ntBASIC36.78■■■■□ 3.48
PCF11O94913 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC36.78■■■■□ 3.48
PCF11O94913 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC36.78■■■■□ 3.48
PCF11O94913 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC36.78■■■■□ 3.48
PCF11O94913 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC36.77■■■■□ 3.48
PCF11O94913 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
PCF11O94913 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
PCF11O94913 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC36.76■■■■□ 3.48
PCF11O94913 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC36.76■■■■□ 3.48
PCF11O94913 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC36.76■■■■□ 3.48
PCF11O94913 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC36.76■■■■□ 3.48
PCF11O94913 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
PCF11O94913 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
PCF11O94913 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC36.75■■■■□ 3.47
PCF11O94913 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC36.74■■■■□ 3.47
PCF11O94913 LBH-205ENST00000407930 756 ntTSL 2 BASIC36.74■■■■□ 3.47
PCF11O94913 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC36.74■■■■□ 3.47
PCF11O94913 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC36.74■■■■□ 3.47
PCF11O94913 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC36.74■■■■□ 3.47
PCF11O94913 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
PCF11O94913 AL356740.2-201ENST00000601559 647 ntBASIC36.74■■■■□ 3.47
PCF11O94913 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
Retrieved 100 of 98,524 protein–RNA pairs in 218 ms