Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
UPK3AO75631 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UPK3AO75631 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UPK3AO75631 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UPK3AO75631 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
UPK3AO75631 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UPK3AO75631 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
UPK3AO75631 PVT1_1.1-201ENST00000615125 194 ntBASIC20.91■□□□□ 0.94
UPK3AO75631 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.9■□□□□ 0.94
UPK3AO75631 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.9■□□□□ 0.94
UPK3AO75631 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.9■□□□□ 0.94
UPK3AO75631 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 AC074183.2-201ENST00000623112 922 ntBASIC20.9■□□□□ 0.94
UPK3AO75631 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 FOXO3B-201ENST00000395675 1928 ntBASIC20.9■□□□□ 0.94
UPK3AO75631 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK3AO75631 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK3AO75631 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.89■□□□□ 0.94
UPK3AO75631 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK3AO75631 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK3AO75631 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UPK3AO75631 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
UPK3AO75631 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK3AO75631 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.89■□□□□ 0.93
UPK3AO75631 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK3AO75631 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK3AO75631 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.88■□□□□ 0.93
UPK3AO75631 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.88■□□□□ 0.93
UPK3AO75631 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK3AO75631 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
UPK3AO75631 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.87■□□□□ 0.93
UPK3AO75631 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.87■□□□□ 0.93
UPK3AO75631 AC019171.1-201ENST00000601251 1056 ntBASIC20.87■□□□□ 0.93
UPK3AO75631 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UPK3AO75631 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.86■□□□□ 0.93
UPK3AO75631 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK3AO75631 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
UPK3AO75631 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UPK3AO75631 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK3AO75631 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK3AO75631 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK3AO75631 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK3AO75631 LINC00543-201ENST00000567234 1845 ntBASIC20.85■□□□□ 0.93
UPK3AO75631 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK3AO75631 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK3AO75631 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK3AO75631 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
UPK3AO75631 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.85■□□□□ 0.93
UPK3AO75631 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.85■□□□□ 0.93
UPK3AO75631 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK3AO75631 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.85■□□□□ 0.93
UPK3AO75631 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.84■□□□□ 0.93
UPK3AO75631 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.84■□□□□ 0.93
UPK3AO75631 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.84■□□□□ 0.93
UPK3AO75631 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.84■□□□□ 0.93
UPK3AO75631 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UPK3AO75631 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UPK3AO75631 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UPK3AO75631 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UPK3AO75631 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UPK3AO75631 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.83■□□□□ 0.93
UPK3AO75631 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UPK3AO75631 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UPK3AO75631 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UPK3AO75631 AL592295.1-201ENST00000400984 884 ntBASIC20.83■□□□□ 0.93
UPK3AO75631 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.83■□□□□ 0.93
UPK3AO75631 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.83■□□□□ 0.93
UPK3AO75631 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.83■□□□□ 0.92
UPK3AO75631 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
UPK3AO75631 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
UPK3AO75631 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UPK3AO75631 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
UPK3AO75631 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UPK3AO75631 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UPK3AO75631 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UPK3AO75631 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.82■□□□□ 0.92
UPK3AO75631 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.82■□□□□ 0.92
UPK3AO75631 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
UPK3AO75631 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms