Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHKB-CPT1BH3BT56 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CHKB-CPT1BH3BT56 LINC01003-201ENST00000564834 1764 ntBASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 CROCCP1-201ENST00000426910 5675 ntBASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CHKB-CPT1BH3BT56 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
CHKB-CPT1BH3BT56 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CHKB-CPT1BH3BT56 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
CHKB-CPT1BH3BT56 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 USP48-205ENST00000421625 2818 ntTSL 2 BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CHKB-CPT1BH3BT56 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CHKB-CPT1BH3BT56 EFS-203ENST00000429593 2610 ntTSL 2 BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHKB-CPT1BH3BT56 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 ABCB10P4-201ENST00000566803 2184 ntBASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHKB-CPT1BH3BT56 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms