Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A5A8TX70 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A5A8TX70 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A5A8TX70 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 AL138724.1-201ENST00000606771 1088 ntBASIC18.56■□□□□ 0.56
COL6A5A8TX70 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A5A8TX70 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A5A8TX70 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A5A8TX70 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A5A8TX70 AC099791.1-201ENST00000416440 715 ntBASIC18.56■□□□□ 0.56
COL6A5A8TX70 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A5A8TX70 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A5A8TX70 AC093827.2-201ENST00000512654 315 ntBASIC18.55■□□□□ 0.56
COL6A5A8TX70 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A5A8TX70 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL6A5A8TX70 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A5A8TX70 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A5A8TX70 AC123595.1-201ENST00000440769 1046 ntBASIC18.54■□□□□ 0.56
COL6A5A8TX70 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL6A5A8TX70 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A5A8TX70 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A5A8TX70 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A5A8TX70 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A5A8TX70 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A5A8TX70 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.54■□□□□ 0.56
COL6A5A8TX70 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A5A8TX70 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A5A8TX70 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A5A8TX70 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A5A8TX70 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A5A8TX70 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A5A8TX70 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.53■□□□□ 0.56
COL6A5A8TX70 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.53■□□□□ 0.56
COL6A5A8TX70 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A5A8TX70 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A5A8TX70 AC233992.3-201ENST00000607491 485 ntBASIC18.53■□□□□ 0.56
COL6A5A8TX70 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A5A8TX70 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A5A8TX70 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
COL6A5A8TX70 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A5A8TX70 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A5A8TX70 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.52■□□□□ 0.56
COL6A5A8TX70 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.52■□□□□ 0.56
COL6A5A8TX70 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A5A8TX70 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A5A8TX70 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A5A8TX70 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.52■□□□□ 0.55
COL6A5A8TX70 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.52■□□□□ 0.55
COL6A5A8TX70 MIR6722-201ENST00000617286 78 ntBASIC18.52■□□□□ 0.55
COL6A5A8TX70 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A5A8TX70 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A5A8TX70 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A5A8TX70 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL6A5A8TX70 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A5A8TX70 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A5A8TX70 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL6A5A8TX70 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A5A8TX70 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A5A8TX70 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL6A5A8TX70 BX255925.1-201ENST00000566954 1854 ntBASIC18.51■□□□□ 0.55
COL6A5A8TX70 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A5A8TX70 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A5A8TX70 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A5A8TX70 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.5■□□□□ 0.55
COL6A5A8TX70 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
COL6A5A8TX70 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A5A8TX70 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A5A8TX70 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A5A8TX70 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.49■□□□□ 0.55
COL6A5A8TX70 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A5A8TX70 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.48■□□□□ 0.55
COL6A5A8TX70 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL6A5A8TX70 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.48■□□□□ 0.55
COL6A5A8TX70 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL6A5A8TX70 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 AC104771.1-201ENST00000603335 964 ntBASIC18.48■□□□□ 0.55
COL6A5A8TX70 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A5A8TX70 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL6A5A8TX70 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A5A8TX70 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms