Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 AC136604.1-201ENST00000418535 575 ntBASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 HNRNPUP1-201ENST00000554987 333 ntBASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 AC027307.3-201ENST00000594262 1100 ntBASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL4A3BPQ9Y5P4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 DFFBP1-201ENST00000433250 979 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AL353779.1-201ENST00000434793 351 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AL589987.1-201ENST00000453380 819 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC093004.1-201ENST00000508850 424 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AP005018.1-201ENST00000525475 301 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC097359.3-201ENST00000603982 1210 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 Z97205.2-201ENST00000564697 1639 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 AC104640.1-201ENST00000562617 2109 ntBASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
COL4A3BPQ9Y5P4 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 AC126177.1-201ENST00000547829 2218 ntBASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL4A3BPQ9Y5P4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms