Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 AC097359.3-201ENST00000603982 1210 ntBASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CUEDC1Q9NWM3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AC025048.3-201ENST00000590609 569 ntBASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AC005702.4-201ENST00000618393 416 ntBASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 AL365209.1-201ENST00000624418 6473 ntBASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.29■□□□□ 0.04
CUEDC1Q9NWM3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AL607033.1-201ENST00000623900 1599 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 PIN1P1-201ENST00000412108 996 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC004890.2-204ENST00000481968 304 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC044860.1-202ENST00000559481 777 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC025048.6-201ENST00000634326 1161 ntBASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.28■□□□□ 0.04
CUEDC1Q9NWM3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms