Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX2Q9NPC8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 RPL5P21-201ENST00000404620 815 ntBASIC16.86■□□□□ 0.29
SIX2Q9NPC8 KLF2P3-201ENST00000451977 1087 ntBASIC16.86■□□□□ 0.29
SIX2Q9NPC8 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 AC125807.1-201ENST00000483097 614 ntBASIC16.86■□□□□ 0.29
SIX2Q9NPC8 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 AL844908.2-201ENST00000609461 460 ntBASIC16.86■□□□□ 0.29
SIX2Q9NPC8 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX2Q9NPC8 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 AL109936.8-201ENST00000641772 604 ntBASIC16.85■□□□□ 0.29
SIX2Q9NPC8 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 MROH4P-201ENST00000431302 1578 ntBASIC16.85■□□□□ 0.29
SIX2Q9NPC8 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX2Q9NPC8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC015922.1-201ENST00000421102 1152 ntBASIC16.84■□□□□ 0.29
SIX2Q9NPC8 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms