Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AL596087.1-201ENST00000400979 1969 ntBASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAIPQ9BWF2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AC007389.4-201ENST00000454674 793 ntBASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AL033527.5-201ENST00000641382 801 ntBASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 REXO1L1P-202ENST00000608646 1974 ntBASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAIPQ9BWF2 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 AC068418.2-201ENST00000577309 3703 ntBASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 CLK3P2-201ENST00000427566 1453 ntBASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 TTTY23B-201ENST00000442790 549 ntBASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 AL450472.2-201ENST00000603663 1156 ntBASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAIPQ9BWF2 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms