Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AC022137.2-201ENST00000503482 481 ntBASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 CICP13-201ENST00000422015 2789 ntBASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 RPL7P3-201ENST00000441388 714 ntBASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.67■□□□□ 0.26
PAAF1Q9BRP4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AL138799.1-201ENST00000448213 1675 ntBASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CSF2RBP1-201ENST00000447905 391 ntBASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AC025181.2-201ENST00000606994 802 ntBASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms