Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ZACNP1-201ENST00000612259 710 ntBASIC15.24■□□□□ 0.03
VPS13AQ96RL7 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AC106886.4-201ENST00000623557 2502 ntBASIC15.23■□□□□ 0.03
VPS13AQ96RL7 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AC021723.1-201ENST00000486306 515 ntBASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 MIR5196-201ENST00000578146 115 ntBASIC15.23■□□□□ 0.03
VPS13AQ96RL7 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 RNMTL1P1-201ENST00000454103 560 ntBASIC15.23■□□□□ 0.03
VPS13AQ96RL7 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 AL157414.3-201ENST00000624276 1954 ntBASIC15.23■□□□□ 0.03
VPS13AQ96RL7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
VPS13AQ96RL7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC079112.1-201ENST00000454972 939 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AP002803.1-201ENST00000528836 498 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC012044.1-201ENST00000603431 297 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC009090.5-201ENST00000624886 2285 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 TBC1D3J-201ENST00000620719 1426 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC010234.1-201ENST00000494599 870 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC243562.2-201ENST00000561247 970 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AP001002.3-201ENST00000623482 206 ntBASIC15.22■□□□□ 0.03
VPS13AQ96RL7 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13AQ96RL7 AC073150.1-201ENST00000450406 1084 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms