Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC092580.3-201ENST00000430932 139 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC055876.3-201ENST00000431496 288 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC241585.1-201ENST00000433527 519 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 RFPL4AP1-201ENST00000530883 850 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 HNRNPUP1-201ENST00000554987 333 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC138649.4-201ENST00000612222 287 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
SYNE3Q6ZMZ3 AC100757.3-201ENST00000622361 1406 ntBASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 AC087499.5-201ENST00000452760 1342 ntBASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 AC136604.1-201ENST00000418535 575 ntBASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 AL590560.3-201ENST00000623350 461 ntBASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SYNE3Q6ZMZ3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AL512638.1-201ENST00000457493 794 ntBASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.56■□□□□ 0.56
SYNE3Q6ZMZ3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms