Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 PPT1-215ENST00000641471 2368 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 MIR661-201ENST00000384842 89 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 BASP1P1-201ENST00000430708 665 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 TARDBPP1-201ENST00000442013 1203 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 SPDYE18-201ENST00000510091 1050 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AC004840.1-201ENST00000636359 365 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AL109936.8-201ENST00000641772 604 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 AC092850.2-201ENST00000623821 2697 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 SSR4P1-203ENST00000599569 2260 ntBASIC19.03■□□□□ 0.64
VPS53Q5VIR6 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS53Q5VIR6 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC126755.1-201ENST00000525846 6405 ntBASIC19.02■□□□□ 0.64
VPS53Q5VIR6 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 BCRP1-201ENST00000444246 691 ntBASIC19.02■□□□□ 0.64
VPS53Q5VIR6 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 MIR6069-201ENST00000620069 79 ntBASIC19.02■□□□□ 0.64
VPS53Q5VIR6 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS53Q5VIR6 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS53Q5VIR6 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS53Q5VIR6 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms