Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
ABCA4P78363 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
ABCA4P78363 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 KRT18P64-201ENST00000434946 1219 ntBASIC13.55□□□□□ -0.24
ABCA4P78363 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.55□□□□□ -0.24
ABCA4P78363 YBX1P6-201ENST00000442962 1002 ntBASIC13.55□□□□□ -0.24
ABCA4P78363 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.55□□□□□ -0.24
ABCA4P78363 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.55□□□□□ -0.24
ABCA4P78363 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.55□□□□□ -0.24
ABCA4P78363 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.55□□□□□ -0.24
ABCA4P78363 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.55□□□□□ -0.24
ABCA4P78363 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.55□□□□□ -0.24
ABCA4P78363 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.55□□□□□ -0.24
ABCA4P78363 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.55□□□□□ -0.24
ABCA4P78363 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.55□□□□□ -0.24
ABCA4P78363 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
ABCA4P78363 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ABCA4P78363 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 AP002414.2-201ENST00000591780 3365 ntBASIC13.54□□□□□ -0.24
ABCA4P78363 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.54□□□□□ -0.24
ABCA4P78363 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
ABCA4P78363 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.54□□□□□ -0.24
ABCA4P78363 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.54□□□□□ -0.24
ABCA4P78363 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.54□□□□□ -0.24
ABCA4P78363 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.54□□□□□ -0.24
ABCA4P78363 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.54□□□□□ -0.24
ABCA4P78363 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.54□□□□□ -0.24
ABCA4P78363 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.54□□□□□ -0.24
ABCA4P78363 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.54□□□□□ -0.24
ABCA4P78363 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ABCA4P78363 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 AC016694.1-201ENST00000434179 700 ntBASIC13.53□□□□□ -0.24
ABCA4P78363 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 KRT90P-201ENST00000549264 1064 ntBASIC13.53□□□□□ -0.24
ABCA4P78363 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
ABCA4P78363 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms