Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.13□□□□□ -0.15
CLRN1P58418 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 BANF1P1-201ENST00000553684 263 ntBASIC14.13□□□□□ -0.15
CLRN1P58418 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.13□□□□□ -0.15
CLRN1P58418 AC027612.4-201ENST00000605371 583 ntBASIC14.13□□□□□ -0.15
CLRN1P58418 AC023511.2-201ENST00000618803 211 ntBASIC14.13□□□□□ -0.15
CLRN1P58418 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.13□□□□□ -0.15
CLRN1P58418 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
CLRN1P58418 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 AC020658.6-201ENST00000623564 1870 ntBASIC14.12□□□□□ -0.15
CLRN1P58418 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 TSEN15P1-201ENST00000423257 515 ntBASIC14.12□□□□□ -0.15
CLRN1P58418 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.12□□□□□ -0.15
CLRN1P58418 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.12□□□□□ -0.15
CLRN1P58418 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.12□□□□□ -0.15
CLRN1P58418 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CLRN1P58418 AC004449.1-201ENST00000564240 433 ntBASIC14.12□□□□□ -0.15
CLRN1P58418 MIR4313-201ENST00000580760 101 ntBASIC14.12□□□□□ -0.15
CLRN1P58418 AL589739.1-201ENST00000607720 493 ntBASIC14.12□□□□□ -0.15
CLRN1P58418 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLRN1P58418 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLRN1P58418 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN1P58418 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN1P58418 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN1P58418 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN1P58418 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN1P58418 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN1P58418 AL139384.1-201ENST00000612143 3047 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN1P58418 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLRN1P58418 AZGP1P1-201ENST00000411909 902 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN1P58418 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN1P58418 AC069262.1-201ENST00000539058 672 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 AL512356.2-201ENST00000546955 174 ntBASIC14.11□□□□□ -0.15
CLRN1P58418 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms