Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL109936.8-201ENST00000641772 604 ntBASIC14.97□□□□□ -0.01
LIM2P55344 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.96□□□□□ -0.01
LIM2P55344 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.96□□□□□ -0.01
LIM2P55344 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.96□□□□□ -0.01
LIM2P55344 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.96□□□□□ -0.01
LIM2P55344 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.96□□□□□ -0.01
LIM2P55344 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.96□□□□□ -0.01
LIM2P55344 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.96□□□□□ -0.01
LIM2P55344 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.96□□□□□ -0.01
LIM2P55344 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.96□□□□□ -0.01
LIM2P55344 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIM2P55344 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.96□□□□□ -0.02
LIM2P55344 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
LIM2P55344 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
LIM2P55344 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIM2P55344 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 TNRC18P2-201ENST00000417666 2714 ntBASIC14.95□□□□□ -0.02
LIM2P55344 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 AC022144.1-201ENST00000602255 1580 ntBASIC14.95□□□□□ -0.02
LIM2P55344 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.95□□□□□ -0.02
LIM2P55344 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.95□□□□□ -0.02
LIM2P55344 AC074338.1-201ENST00000416825 156 ntBASIC14.95□□□□□ -0.02
LIM2P55344 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.95□□□□□ -0.02
LIM2P55344 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.95□□□□□ -0.02
LIM2P55344 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 AC009407.1-201ENST00000568958 598 ntBASIC14.95□□□□□ -0.02
LIM2P55344 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.95□□□□□ -0.02
LIM2P55344 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 AC074044.1-201ENST00000609673 707 ntBASIC14.95□□□□□ -0.02
LIM2P55344 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.95□□□□□ -0.02
LIM2P55344 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.95□□□□□ -0.02
LIM2P55344 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LIM2P55344 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms