Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGCS2P54868 KLF2P2-201ENST00000416807 1039 ntBASIC18.02■□□□□ 0.48
HMGCS2P54868 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HMGCS2P54868 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGCS2P54868 AL591846.1-201ENST00000451736 433 ntBASIC18.02■□□□□ 0.48
HMGCS2P54868 ACR-203ENST00000529621 708 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGCS2P54868 AP001258.2-201ENST00000529891 490 ntBASIC18.02■□□□□ 0.48
HMGCS2P54868 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGCS2P54868 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGCS2P54868 AC006453.4-201ENST00000636949 1252 ntBASIC18.02■□□□□ 0.48
HMGCS2P54868 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGCS2P54868 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
HMGCS2P54868 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGCS2P54868 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGCS2P54868 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGCS2P54868 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGCS2P54868 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGCS2P54868 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGCS2P54868 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGCS2P54868 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.01■□□□□ 0.47
HMGCS2P54868 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
HMGCS2P54868 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGCS2P54868 ECM1P1-201ENST00000604092 1279 ntBASIC18.01■□□□□ 0.47
HMGCS2P54868 AC005695.3-201ENST00000614522 232 ntBASIC18.01■□□□□ 0.47
HMGCS2P54868 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 AL008638.5-201ENST00000623814 1298 ntBASIC18.01■□□□□ 0.47
HMGCS2P54868 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HMGCS2P54868 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGCS2P54868 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGCS2P54868 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HMGCS2P54868 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 AC124067.4-201ENST00000519691 2379 ntBASIC18■□□□□ 0.47
HMGCS2P54868 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18■□□□□ 0.47
HMGCS2P54868 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 ACTBP8-201ENST00000403258 1108 ntBASIC18■□□□□ 0.47
HMGCS2P54868 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18■□□□□ 0.47
HMGCS2P54868 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC18■□□□□ 0.47
HMGCS2P54868 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 HOMER2P2-201ENST00000451621 847 ntBASIC18■□□□□ 0.47
HMGCS2P54868 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18■□□□□ 0.47
HMGCS2P54868 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18■□□□□ 0.47
HMGCS2P54868 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18■□□□□ 0.47
HMGCS2P54868 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 AC025181.2-201ENST00000606994 802 ntBASIC18■□□□□ 0.47
HMGCS2P54868 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18■□□□□ 0.47
HMGCS2P54868 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18■□□□□ 0.47
HMGCS2P54868 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HMGCS2P54868 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18■□□□□ 0.47
HMGCS2P54868 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms