Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CTCFP49711 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.14■□□□□ 0.5
CTCFP49711 AL513477.1-201ENST00000602865 2407 ntBASIC18.14■□□□□ 0.5
CTCFP49711 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTCFP49711 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
CTCFP49711 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CTCFP49711 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CTCFP49711 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CTCFP49711 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CTCFP49711 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.14■□□□□ 0.49
CTCFP49711 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 AC006277.1-201ENST00000624348 1610 ntBASIC18.14■□□□□ 0.49
CTCFP49711 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.14■□□□□ 0.49
CTCFP49711 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.14■□□□□ 0.49
CTCFP49711 IGLV3-15-201ENST00000518356 244 ntBASIC18.14■□□□□ 0.49
CTCFP49711 AP001582.1-201ENST00000525856 295 ntBASIC18.14■□□□□ 0.49
CTCFP49711 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.14■□□□□ 0.49
CTCFP49711 AC093813.1-201ENST00000605066 256 ntBASIC18.14■□□□□ 0.49
CTCFP49711 AC013467.2-201ENST00000605472 835 ntBASIC18.14■□□□□ 0.49
CTCFP49711 PLS3-210ENST00000626746 216 ntTSL 4 BASIC18.14■□□□□ 0.49
CTCFP49711 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.14■□□□□ 0.49
CTCFP49711 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.14■□□□□ 0.49
CTCFP49711 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTCFP49711 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CTCFP49711 AL162727.3-201ENST00000635661 2787 ntBASIC18.13■□□□□ 0.49
CTCFP49711 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.13■□□□□ 0.49
CTCFP49711 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.13■□□□□ 0.49
CTCFP49711 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CTCFP49711 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 AC078991.1-201ENST00000437297 610 ntBASIC18.13■□□□□ 0.49
CTCFP49711 AC006335.1-201ENST00000445200 547 ntBASIC18.13■□□□□ 0.49
CTCFP49711 CEP164P1-201ENST00000455142 418 ntBASIC18.13■□□□□ 0.49
CTCFP49711 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 RN7SL596P-201ENST00000582123 288 ntBASIC18.13■□□□□ 0.49
CTCFP49711 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.13■□□□□ 0.49
CTCFP49711 AP005019.2-201ENST00000615104 511 ntBASIC18.13■□□□□ 0.49
CTCFP49711 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.13■□□□□ 0.49
CTCFP49711 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.13■□□□□ 0.49
CTCFP49711 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTCFP49711 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.12■□□□□ 0.49
CTCFP49711 TARDBPP1-201ENST00000442013 1203 ntBASIC18.12■□□□□ 0.49
CTCFP49711 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.12■□□□□ 0.49
CTCFP49711 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 RPL18P13-201ENST00000478088 569 ntBASIC18.12■□□□□ 0.49
CTCFP49711 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 523.1 ms