Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.9□□□□□ -0.02
RFX3P48380 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
RFX3P48380 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.9□□□□□ -0.02
RFX3P48380 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 AC026150.2-201ENST00000564693 1156 ntBASIC14.9□□□□□ -0.02
RFX3P48380 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 AC099063.4-201ENST00000641099 1602 ntBASIC14.9□□□□□ -0.02
RFX3P48380 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
RFX3P48380 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.9□□□□□ -0.02
RFX3P48380 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX3P48380 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX3P48380 AC008677.1-201ENST00000519230 1561 ntBASIC14.9□□□□□ -0.02
RFX3P48380 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 AL136982.4-201ENST00000437689 1740 ntBASIC14.89□□□□□ -0.03
RFX3P48380 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 MTND6P24-201ENST00000440466 518 ntBASIC14.89□□□□□ -0.03
RFX3P48380 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX3P48380 AC243562.2-201ENST00000561247 970 ntBASIC14.89□□□□□ -0.03
RFX3P48380 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
RFX3P48380 AC004449.1-201ENST00000564240 433 ntBASIC14.89□□□□□ -0.03
RFX3P48380 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX3P48380 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX3P48380 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 AC018529.1-201ENST00000613063 361 ntBASIC14.89□□□□□ -0.03
RFX3P48380 LINC00628-201ENST00000628516 1289 ntBASIC14.89□□□□□ -0.03
RFX3P48380 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms