Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
CDX1P47902 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CDX1P47902 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 AC004461.1-201ENST00000412461 403 ntBASIC12.97□□□□□ -0.33
CDX1P47902 TFAMP1-201ENST00000412727 736 ntBASIC12.97□□□□□ -0.33
CDX1P47902 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 AC022145.2-201ENST00000598203 171 ntBASIC12.97□□□□□ -0.33
CDX1P47902 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.97□□□□□ -0.33
CDX1P47902 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CDX1P47902 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.97□□□□□ -0.33
CDX1P47902 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CDX1P47902 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CDX1P47902 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 AC005912.2-201ENST00000619492 2400 ntBASIC12.97□□□□□ -0.33
CDX1P47902 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CDX1P47902 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.96□□□□□ -0.33
CDX1P47902 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 KRT18P28-201ENST00000453838 1332 ntBASIC12.96□□□□□ -0.33
CDX1P47902 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms