Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 SLC7A15P-201ENST00000424028 1363 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 MIR658-201ENST00000385210 100 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 MIR1909-201ENST00000411312 80 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 AC112492.5-201ENST00000421897 457 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 MYCLP2-201ENST00000449268 967 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 ACA64.2-201ENST00000459014 129 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.22□□□□□ -0.45
HOXD3P31249 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC12.22□□□□□ -0.45
HOXD3P31249 AC055876.2-201ENST00000531834 546 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
HOXD3P31249 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
HOXD3P31249 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
HOXD3P31249 RAB43P1-201ENST00000561790 589 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC12.22□□□□□ -0.45
HOXD3P31249 AC074044.1-201ENST00000609673 707 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 AC004461.2-201ENST00000629517 803 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXD3P31249 CDC14C-201ENST00000428251 1719 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXD3P31249 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXD3P31249 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXD3P31249 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXD3P31249 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HOXD3P31249 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC12.21□□□□□ -0.45
HOXD3P31249 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 AC011270.2-201ENST00000624293 2550 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 TTTY23B-201ENST00000442790 549 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.21□□□□□ -0.45
HOXD3P31249 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 AL589987.1-201ENST00000453380 819 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 PHKG1P2-201ENST00000457537 863 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXD3P31249 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HOXD3P31249 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.21□□□□□ -0.45
HOXD3P31249 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXD3P31249 KRT17P8-201ENST00000540749 863 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC12.21□□□□□ -0.45
HOXD3P31249 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
HOXD3P31249 AC023310.3-201ENST00000557027 670 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC100756.1-201ENST00000562736 682 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 AC138749.3-201ENST00000567691 622 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 AC025048.3-201ENST00000590609 569 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 SRD5A3P1-201ENST00000603021 949 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC116165.1-201ENST00000611806 668 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 AC005702.4-201ENST00000618393 416 ntBASIC12.21□□□□□ -0.45
HOXD3P31249 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HOXD3P31249 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.21□□□□□ -0.45
HOXD3P31249 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.21□□□□□ -0.46
HOXD3P31249 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms