Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BDNFP23560 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BDNFP23560 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BDNFP23560 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BDNFP23560 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.58■□□□□ 0.25
BDNFP23560 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.58■□□□□ 0.25
BDNFP23560 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
BDNFP23560 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.58■□□□□ 0.24
BDNFP23560 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.58■□□□□ 0.24
BDNFP23560 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.58■□□□□ 0.24
BDNFP23560 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.58■□□□□ 0.24
BDNFP23560 AC011495.1-201ENST00000498085 584 ntBASIC16.58■□□□□ 0.24
BDNFP23560 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.58■□□□□ 0.24
BDNFP23560 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.58■□□□□ 0.24
BDNFP23560 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.58■□□□□ 0.24
BDNFP23560 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.58■□□□□ 0.24
BDNFP23560 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
BDNFP23560 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.58■□□□□ 0.24
BDNFP23560 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.58■□□□□ 0.24
BDNFP23560 IGHV3-72-202ENST00000621503 303 ntBASIC16.58■□□□□ 0.24
BDNFP23560 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.58■□□□□ 0.24
BDNFP23560 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
BDNFP23560 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.58■□□□□ 0.24
BDNFP23560 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BDNFP23560 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 KRT18P43-201ENST00000469825 1281 ntBASIC16.57■□□□□ 0.24
BDNFP23560 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
BDNFP23560 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.57■□□□□ 0.24
BDNFP23560 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
BDNFP23560 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BDNFP23560 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms