Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LDB3O75112 KRT18P64-201ENST00000434946 1219 ntBASIC14.84□□□□□ -0.03
LDB3O75112 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.84□□□□□ -0.03
LDB3O75112 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.84□□□□□ -0.03
LDB3O75112 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 SPDYE18-201ENST00000510091 1050 ntBASIC14.84□□□□□ -0.03
LDB3O75112 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.84□□□□□ -0.03
LDB3O75112 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 SPCS2P1-201ENST00000561636 679 ntBASIC14.84□□□□□ -0.03
LDB3O75112 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.84□□□□□ -0.03
LDB3O75112 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LDB3O75112 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.83□□□□□ -0.03
LDB3O75112 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LDB3O75112 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
LDB3O75112 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LDB3O75112 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.83□□□□□ -0.03
LDB3O75112 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LDB3O75112 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
LDB3O75112 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LDB3O75112 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.83□□□□□ -0.04
LDB3O75112 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.83□□□□□ -0.04
LDB3O75112 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.83□□□□□ -0.04
LDB3O75112 BCRP1-201ENST00000444246 691 ntBASIC14.83□□□□□ -0.04
LDB3O75112 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.83□□□□□ -0.04
LDB3O75112 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.83□□□□□ -0.04
LDB3O75112 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.83□□□□□ -0.04
LDB3O75112 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.83□□□□□ -0.04
LDB3O75112 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.83□□□□□ -0.04
LDB3O75112 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.83□□□□□ -0.04
LDB3O75112 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
LDB3O75112 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.83□□□□□ -0.04
LDB3O75112 AJ011932.1-201ENST00000621707 465 ntBASIC14.83□□□□□ -0.04
LDB3O75112 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LDB3O75112 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.83□□□□□ -0.04
LDB3O75112 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.83□□□□□ -0.04
LDB3O75112 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LDB3O75112 BTBD7P1-201ENST00000447253 1453 ntBASIC14.82□□□□□ -0.04
LDB3O75112 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.82□□□□□ -0.04
LDB3O75112 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.82□□□□□ -0.04
LDB3O75112 AC114501.2-201ENST00000439631 535 ntBASIC14.82□□□□□ -0.04
LDB3O75112 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.82□□□□□ -0.04
LDB3O75112 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.82□□□□□ -0.04
LDB3O75112 AL096865.1-201ENST00000606796 927 ntBASIC14.82□□□□□ -0.04
LDB3O75112 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.82□□□□□ -0.04
LDB3O75112 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LDB3O75112 AC127383.1-201ENST00000444697 1800 ntBASIC14.82□□□□□ -0.04
LDB3O75112 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms