Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.8■□□□□ 0.12
SHOX2O60902 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 AC005332.1-201ENST00000577698 1310 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SHOX2O60902 RCN1P2-201ENST00000398357 915 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.8■□□□□ 0.12
SHOX2O60902 AL031133.1-201ENST00000406807 723 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 VENTXP7-201ENST00000475503 772 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.8■□□□□ 0.12
SHOX2O60902 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.8■□□□□ 0.12
SHOX2O60902 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 AC011467.4-201ENST00000594891 528 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SHOX2O60902 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 AC091076.1-201ENST00000610741 619 ntBASIC15.8■□□□□ 0.12
SHOX2O60902 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.8■□□□□ 0.12
SHOX2O60902 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SHOX2O60902 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 AC233702.3-201ENST00000578656 1387 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SHOX2O60902 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 OR2I1P-210ENST00000642037 4691 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 KRT18P1-202ENST00000452408 1331 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC15.79■□□□□ 0.12
SHOX2O60902 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.79■□□□□ 0.12
SHOX2O60902 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 GPX1P2-201ENST00000429271 606 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 AC096582.2-201ENST00000510860 516 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SHOX2O60902 AL121672.3-201ENST00000608644 468 ntBASIC15.79■□□□□ 0.12
SHOX2O60902 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SHOX2O60902 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
SHOX2O60902 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.79■□□□□ 0.12
SHOX2O60902 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SHOX2O60902 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHOX2O60902 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 MINOS1P3-201ENST00000457048 203 ntBASIC15.78■□□□□ 0.12
SHOX2O60902 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.78■□□□□ 0.12
SHOX2O60902 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHOX2O60902 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHOX2O60902 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms