Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.04□□□□□ -0.16
MMP28Q9H239 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.04□□□□□ -0.16
MMP28Q9H239 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.04□□□□□ -0.16
MMP28Q9H239 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.04□□□□□ -0.16
MMP28Q9H239 AL590627.1-203ENST00000421194 1026 ntBASIC14.04□□□□□ -0.16
MMP28Q9H239 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 AC073648.2-201ENST00000510116 352 ntBASIC14.04□□□□□ -0.16
MMP28Q9H239 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 GPALPP1-207ENST00000611650 899 ntBASIC14.04□□□□□ -0.16
MMP28Q9H239 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.04□□□□□ -0.16
MMP28Q9H239 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
MMP28Q9H239 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MMP28Q9H239 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
MMP28Q9H239 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.03□□□□□ -0.16
MMP28Q9H239 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 AC021087.4-201ENST00000563761 564 ntBASIC14.03□□□□□ -0.16
MMP28Q9H239 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.03□□□□□ -0.16
MMP28Q9H239 AC139887.3-201ENST00000568585 713 ntBASIC14.03□□□□□ -0.16
MMP28Q9H239 AC064862.7-201ENST00000604520 867 ntBASIC14.03□□□□□ -0.16
MMP28Q9H239 TP73-AS1-207ENST00000624167 988 ntBASIC14.03□□□□□ -0.16
MMP28Q9H239 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 AC140479.7-201ENST00000636301 2332 ntBASIC14.03□□□□□ -0.16
MMP28Q9H239 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
MMP28Q9H239 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MMP28Q9H239 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.03□□□□□ -0.16
MMP28Q9H239 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.02□□□□□ -0.16
MMP28Q9H239 COL6A4P2-202ENST00000504443 2753 ntBASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms