Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC106881.1-201ENST00000605849 3329 ntBASIC18.05■□□□□ 0.48
USP28Q96RU2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
USP28Q96RU2 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
USP28Q96RU2 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
USP28Q96RU2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP28Q96RU2 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
USP28Q96RU2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.04■□□□□ 0.48
USP28Q96RU2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
USP28Q96RU2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.04■□□□□ 0.48
USP28Q96RU2 DNAJB3-201ENST00000446806 729 ntBASIC18.04■□□□□ 0.48
USP28Q96RU2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.04■□□□□ 0.48
USP28Q96RU2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AC026150.2-201ENST00000564693 1156 ntBASIC18.04■□□□□ 0.48
USP28Q96RU2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 AC003101.2-201ENST00000612557 442 ntBASIC18.04■□□□□ 0.48
USP28Q96RU2 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.04■□□□□ 0.48
USP28Q96RU2 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.04■□□□□ 0.48
USP28Q96RU2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USP28Q96RU2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP28Q96RU2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.03■□□□□ 0.48
USP28Q96RU2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AC112482.1-201ENST00000492080 688 ntBASIC18.03■□□□□ 0.48
USP28Q96RU2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.03■□□□□ 0.48
USP28Q96RU2 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP28Q96RU2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.03■□□□□ 0.48
USP28Q96RU2 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.02■□□□□ 0.48
USP28Q96RU2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP28Q96RU2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms