Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 IL9RP2-201ENST00000423948 1312 ntBASIC11.88□□□□□ -0.51
LINC00477Q96M19 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 KRT18P3-201ENST00000451602 1288 ntBASIC11.88□□□□□ -0.51
LINC00477Q96M19 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 RPL18-209ENST00000550645 463 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 RPL18-214ENST00000552588 559 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 AL135744.1-201ENST00000565098 629 ntBASIC11.88□□□□□ -0.51
LINC00477Q96M19 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 FAM197Y3-203ENST00000618346 717 ntBASIC11.88□□□□□ -0.51
LINC00477Q96M19 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00477Q96M19 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00477Q96M19 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 HLA-H-201ENST00000383620 1096 ntBASIC11.87□□□□□ -0.51
LINC00477Q96M19 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AL355306.1-201ENST00000415580 579 ntBASIC11.87□□□□□ -0.51
LINC00477Q96M19 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 KRT8P23-201ENST00000560090 1207 ntBASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms