Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 HNRNPUP1-201ENST00000554987 333 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AC099063.4-201ENST00000641099 1602 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 UXT-AS1-201ENST00000590504 1525 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
ATG4AQ8WYN0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AC023024.2-201ENST00000623561 1993 ntBASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 EEF1DP4-201ENST00000446006 880 ntBASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 AC097359.3-201ENST00000603982 1210 ntBASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.39■□□□□ 0.21
ATG4AQ8WYN0 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 MCCD1P2-201ENST00000423228 335 ntBASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 ALG1L5P-201ENST00000482043 771 ntBASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AC148477.4-201ENST00000613430 1793 ntBASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 CICP23-201ENST00000605013 2741 ntBASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 AC007686.3-201ENST00000619017 3487 ntBASIC16.38■□□□□ 0.21
ATG4AQ8WYN0 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms