Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 AC092506.1-202ENST00000401022 528 ntBASIC19.44■□□□□ 0.7
SYNE4Q8N205 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 RHOQP1-201ENST00000555758 579 ntBASIC19.44■□□□□ 0.7
SYNE4Q8N205 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SYNE4Q8N205 AC024909.3-201ENST00000611513 2257 ntBASIC19.44■□□□□ 0.7
SYNE4Q8N205 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE4Q8N205 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC006033.1-201ENST00000440505 426 ntBASIC19.43■□□□□ 0.7
SYNE4Q8N205 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC008687.7-202ENST00000637404 953 ntBASIC19.43■□□□□ 0.7
SYNE4Q8N205 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE4Q8N205 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE4Q8N205 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 MIR326-201ENST00000362220 95 ntBASIC19.42■□□□□ 0.7
SYNE4Q8N205 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE4Q8N205 ELK2AP-201ENST00000392510 1007 ntBASIC19.42■□□□□ 0.7
SYNE4Q8N205 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.42■□□□□ 0.7
SYNE4Q8N205 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms