Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 ACA64.2-201ENST00000459014 129 ntBASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 AC026410.3-201ENST00000514280 936 ntBASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 AC015936.2-201ENST00000593177 259 ntBASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 PRAL-201ENST00000624952 3286 ntBASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC60Q8IWA6 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AL139384.1-201ENST00000612143 3047 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AC092127.1-201ENST00000567093 3455 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 TNRC18P3-201ENST00000441896 2691 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 ATP5G2P4-201ENST00000442175 420 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 IGHV3-71-201ENST00000523324 359 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 CLUHP6-201ENST00000580789 941 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 AC107373.2-201ENST00000607735 490 ntBASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC60Q8IWA6 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 CROCCP1-201ENST00000426910 5675 ntBASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 GAPDHP40-201ENST00000505218 1006 ntBASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 AC005252.2-201ENST00000624630 1141 ntBASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 CICP13-201ENST00000422015 2789 ntBASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms