Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 CICP13-201ENST00000422015 2789 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC020658.6-201ENST00000623564 1870 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 GRN-214ENST00000589265 1632 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 FO393414.2-201ENST00000405153 598 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC025048.3-201ENST00000590609 569 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC008738.7-201ENST00000609744 511 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC005702.4-201ENST00000618393 416 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 FLII-221ENST00000578558 2377 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 LINC00554-201ENST00000564841 3011 ntBASIC19.05■□□□□ 0.64
VPS53Q5VIR6 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS53Q5VIR6 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC013268.4-201ENST00000637413 2228 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC073347.1-201ENST00000421633 2643 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 RN7SL618P-201ENST00000477850 296 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC004790.1-201ENST00000612686 536 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AL607033.1-201ENST00000623900 1599 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.04■□□□□ 0.64
VPS53Q5VIR6 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS53Q5VIR6 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms